# biology/htslib - The NetBSD Packages Collection

C library for high-throughput sequencing data formats

    HTSlib is an implementation of a unified C library for accessing common file
    formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
    data. It is the core library used by samtools and bcftools.

- Source version: `htslib-1.21nb8`
- Maintainer: bacon AT NetBSD.org
- Website: https://www.htslib.org/
- License: mit
- Package history: cvs, hg, git

## Build dependencies

pkgtools/mktools devel/automake devel/autoconf devel/gmake pkgtools/cwrappers

## Runtime dependencies

www/curl devel/libdeflate www/curl

## Binary packages

OS | Architecture | Version
--- | --- | ---
NetBSD 10.0 | aarch64 | htslib-1.21nb6.tgz
NetBSD 10.0 | aarch64 | htslib-1.21nb5.tgz
NetBSD 10.0 | aarch64eb | htslib-1.21nb5.tgz
NetBSD 10.0 | alpha | htslib-1.21nb5.tgz
NetBSD 10.0 | earmv6hf | htslib-1.21nb5.tgz
NetBSD 10.0 | earmv6hf | htslib-1.21nb6.tgz
NetBSD 10.0 | earmv7hf | htslib-1.21nb5.tgz
NetBSD 10.0 | earmv7hf | htslib-1.21nb6.tgz
NetBSD 10.0 | i386 | htslib-1.21nb6.tgz
NetBSD 10.0 | i386 | htslib-1.21nb5.tgz
NetBSD 10.0 | powerpc | htslib-1.21nb5.tgz
NetBSD 10.0 | powerpc | htslib-1.21nb3.tgz
NetBSD 10.0 | powerpc | htslib-1.21nb5.tgz
NetBSD 10.0 | powerpc | htslib-1.21nb6.tgz
NetBSD 10.0 | x86_64 | htslib-1.21nb6.tgz
NetBSD 10.0 | x86_64 | htslib-1.21nb5.tgz
NetBSD 11.0 | aarch64 | htslib-1.21nb5.tgz
NetBSD 11.0 | aarch64 | htslib-1.21nb6.tgz
NetBSD 11.0 | aarch64eb | htslib-1.21nb5.tgz
NetBSD 11.0 | aarch64eb | htslib-1.21nb6.tgz
NetBSD 11.0 | earmv6hf | htslib-1.21nb5.tgz
NetBSD 11.0 | earmv6hf | htslib-1.21nb6.tgz
NetBSD 11.0 | earmv7hf | htslib-1.21nb5.tgz
NetBSD 11.0 | earmv7hf | htslib-1.21nb6.tgz
NetBSD 11.0 | i386 | htslib-1.21nb6.tgz
NetBSD 11.0 | i386 | htslib-1.21nb5.tgz
NetBSD 11.0 | mips64eb | htslib-1.21nb6.tgz
NetBSD 11.0 | powerpc | htslib-1.21nb6.tgz
NetBSD 11.0 | riscv64 | htslib-1.21nb5.tgz
NetBSD 11.0 | riscv64 | htslib-1.21nb6.tgz
NetBSD 11.0 | x86_64 | htslib-1.21nb6.tgz
NetBSD 11.0 | x86_64 | htslib-1.21nb5.tgz
NetBSD 9.0 | earmv6hf | htslib-1.21nb5.tgz
NetBSD 9.0 | earmv6hf | htslib-1.21nb6.tgz
NetBSD 9.0 | earmv7hf | htslib-1.21nb5.tgz
NetBSD 9.0 | earmv7hf | htslib-1.21nb6.tgz
NetBSD 9.0 | i386 | htslib-1.21nb6.tgz
NetBSD 9.0 | i386 | htslib-1.21nb5.tgz
NetBSD 9.0 | powerpc | htslib-1.21nb5.tgz
NetBSD 9.0 | x86_64 | htslib-1.21nb6.tgz
NetBSD 9.0 | x86_64 | htslib-1.21nb5.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

## Available build options

(none)

## Known vulnerabilities

- a open symlink-attack vulnerability

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.